Lemon Blueberry Muffins

Lemon Blueberry Muffins are light, tender, and delicious, made with whole wheat flour and bursting with fresh lemon and juicy blueberries for a wholesome breakfast or snack!

Lemon Blueberry Muffins with text overlay.


If you enjoy berry-laden goodies, you'll also love Blueberry Crisp, Easy Blackberry Cake, Ultimate Strawberry Shortcake, or Homemade Blackberry Cobbler!

A few weeks ago, before I headed out of town to Canada, I spent a busy few days prepping to leave. My husband was coincidentally going to be away for a work trip on the same days that I was set to be gone, so my mom was coming over to our house to keep the kids. And while she's perfectly capable of wrangling the three of them on her own, I try to make things a little easier on her by making breakfasts and dinners before I leave so that all she has to do is feed the hungry mob without actually having to cook. And so were devised these delectable Lemon Blueberry Muffins!

Whole Wheat Lemon Blueberry Muffins ~ light, tender, and bursting with fresh lemon and juicy blueberries for a wholesome breakfast or snack! | FiveHeartHome.com

The Inspiration

So before my trip, I whipped up a big batch of granola for breakfasts and snacks, and I also had plans to bake muffins with an extra pint of blueberries that had been hanging out in the fridge. I typically rely upon my tried-and-true Classic Blueberry Muffins recipe for such muffin-making, but I often swap in whole wheat pastry flour to up the health factor.

When my 7-year-old caught wind that I was making muffins, he asked if I could make them lemon, his favorite flavor for baked goodies. I initially told him no, because after all, I needed to use up those about-to-be-overripe blueberries. But then -- lightbulb moment -- it hit me that I could probably combine the two into Lemon Blueberry Muffins!

Bowl of fresh blueberries.


The ingredients for these Lemon Blueberry Muffins are pretty standard and straightforward. Here are a few noteworthy comments about a few of them:

  • Whole Wheat Pastry Flour. This is one of my favorite pantry staples when it comes to making baked goods more healthy. Whole wheat pastry flour is 100% whole wheat, but it lends baked goods a lighter taste and texture than regular whole wheat flour (more akin to baking with all-purpose white flour). That being said, you may substitute all-purpose flour in this recipe if you prefer. In the comments, others have also reported success making these muffins using regular whole wheat flour. However, I haven't tried doing so and it's possible that such muffins may turn out a bit denser, heavier, and more wheat-y tasting.
  • Butter. These muffins rely on softened butter instead of oil. As a result, the batter is decidedly thick and the muffins are soft and tender yet sturdy. I typically use unsalted, but salted will work just fine if that's all you've got.
  • Lemon juice. It's hard to beat fresh-squeezed citrus juice, but I've also been known to keep a bottle of real, all-natural lemon juice (AKA, the only ingredient is lemon juice) in my fridge for when I don't happen to have any fresh lemons on hand. In that case, I also leave out the zest but increase the lemon extract to ¾ teaspoon.
  • Blueberries. Fresh blueberries are great, but you can use frozen blueberries just as well. Just be sure not to thaw them first so that they don't get mushy and break up when you stir them in.
Close-up of fresh lemon and lemon half.

How to Make Lemon Blueberry Muffins

This recipe is quick and easy to make and, best of all, it dirties just one bowl!

  1. Whisk together the dry ingredients.
  2. Work in the softened butter using a fork or an electric mixer.
  3. Blend in the remaining ingredients, and then fold in the blueberries.
  4. Divide the batter between 18 lined muffin pans, bake until they just test done, and remove to a wire rack to cool.

Because these Lemon Blueberry Muffins bake at a relatively high temperature, they rise nicely and the tops get all golden and crunchy. The fresh lemon juice and zest add lovely flavor and the plump berries pop, oozing their sweet juices through the muffins.

Whole wheat Lemon Blueberry Muffins on wire cooling rack.

These whole wheat beauties were a success all around. They are wholesome yet light, boasting a tender crumb thanks to the 100% whole wheat pastry flour.

The kids and my mom reportedly enjoyed these muffins for breakfast every day that I was gone, alongside hard-boiled eggs and fruit. The only downside was that by the time I returned from my trip, there was nary a muffin left for me! Fortunately, I'd swiped a couple early that morning of my departure, before my red-eye flight... 😉

Lemon Blueberry Muffin on plate with missing bite.

Suffice it to say that Lemon Blueberry Muffins will be going into rotation around here as our family's new favorite muffin recipe. I hope that you and yours love them just as much!

Aerial view of Lemon Blueberry Muffins on rack.
Whole Wheat Lemon Blueberry Muffins on wire rack.

Lemon Blueberry Muffins

Lemon Blueberry Muffins are light, tender, and delicious, made with whole wheat flour and bursting with fresh lemon and juicy blueberries for a wholesome breakfast or snack!
Course: Bread
Cuisine: American
Prep Time: 10 minutes
Cook Time: 20 minutes
Total Time: 30 minutes
Servings: 18 muffins
Calories: 187kcal
Print Pin Rate


  • 3 cups whole wheat pastry flour
  • 1 cup sugar
  • 1 tablespoon baking powder
  • ¾ teaspoon salt
  • ½ cup (1 stick) butter, softened
  • 2 eggs, at room temperature
  • ¾ cup milk, at room temperature
  • ¼ cup fresh-squeezed lemon juice
  • 2 teaspoons pure vanilla extract
  • 2 teaspoons lemon zest
  • ½ teaspoon pure lemon extract, optional
  • 1 pint fresh blueberries, about 2 cups


  • Preheat oven to 400°F. Line 18 muffin cups with paper liners.
  • In a large bowl, whisk together whole wheat pastry flour, sugar, baking powder, and salt. Work in the softened butter with an electric mixer or fork. Blend in the eggs, milk, lemon juice, vanilla, lemon zest, and lemon extract (if using) until all ingredients are incorporated, but do not overbeat. Gently fold in the blueberries. Evenly divide the batter between the 18 prepared muffin cups.
  • Bake for 18 to 23 minutes or until the muffins just test done with a toothpick, taking care not to overbake. After a few minutes, remove the muffins from the pans and cool on a wire rack, or eat them warm out of the oven with a pat of salted butter.


  • You may use frozen blueberries in these muffins, but don't thaw them first. Doing so will just make them all mushy.
  • This recipe comes together quickly in the bowl of a stand mixer, but you can also mix it in a bowl by hand if you prefer.
  • For an extra special touch, sprinkle the muffins with coarse sparkling sugar before baking.


Calories: 187kcal | Carbohydrates: 30g | Protein: 3g | Fat: 6g | Saturated Fat: 3g | Cholesterol: 32mg | Sodium: 154mg | Potassium: 183mg | Fiber: 2g | Sugar: 14g | Vitamin A: 215IU | Vitamin C: 4.1mg | Calcium: 53mg | Iron: 0.9mg
Made this recipe? I'd love to see on IG!Mention @FiveHeartHome or tag #FiveHeartHome!

Post originally published on July 13, 2017.


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    1. Hi Carol! I haven't tried that, but I'm sure it would work. Your muffins might just be a bit denser than if they'd been made with the whole wheat pastry flour. 🙂

  1. 5 stars
    Big thumbs up, this recipe is a keeper! I did increase the lemon zest, cut the sugar by half, and used 2 cups white whole wheat flour plus one cup rolled oats. Moist, tender, full of flavor, and delicious.

    1. I am not a baker, but this recipe was easy enough even for me!😀 I made no changes, the muffins came out delicious! Than you, I look forward to trying more of your recipes!

  2. 5 stars
    This was great! I made a few changes. Instead of doing 3 cups of the pastry flour, i did 1 3/4 cup whole wheat flour, 1 cup whole oats, 1/4 cup flax seed meal. I also cut the sugar down to 1/2 cup, and added 3/4 teaspoon of lemon extract instead of 1/2! I also added another 1/2 cup of blueberries since we love them! This turned out so light and awesome!

  3. 5 stars
    These are delicious! Mine didn’t rise but I may have over beat the batter. I use wheat flour and they look more rustic than yours, they are brown so you don’t get that yellow color which is fine. There are super easy to make, and taste great.

  4. 5 stars
    Wow, this recipe is incredible, easy to make and the muffins come well raised and delicious.
    I changed 1 cup of flour for 3/4 cup of oat bran to make the even more healthy.
    Thanks for share this recipe.